PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn133881
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 371aa    MW: 40347.2 Da    PI: 6.6798
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn133881genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.85.5e-36351402105
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssaseceaesssssasnsssgkaaksaa 95 
                 +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++     +s++     ++s++s++  +s g  ++++ 
  Achn133881  35 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELDKLppwkpTSDD----HTNSHESQQIRDSFGGTSSNTL 129
                 79**************************************************************654431111....2333333333334443333333 PP

         TCP  96 .kskksqksaa 105
                  ++ + q++++
  Achn133881 130 lTGGDVQHQEQ 140
                 23333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.2E-3235134IPR005333Transcription factor, TCP
PROSITE profilePS5136933.2733795IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEETYNHRQT PSRLGLRHAG GEIVEVEGGH IVRSTGRKDR HSKVCTAKGP RDRRVRLAAH  60
TAIQFYDVQD RLGYDRPSKA VDWLIKKAKA AIDELDKLPP WKPTSDDHTN SHESQQIRDS  120
FGGTSSNTLL TGGDVQHQEQ LMEMTNAREN DSGGFLPASL DSDAIADTIK SFFPMGGASA  180
ETNSSSMQFQ NFPPPDFLSR TGGQRQQDLR LSLQSMDDQI LLHHHPHHQS PPQSQPLFSG  240
LGFDAAPSGG WWNTGGGDAA SGGGGGFIFN SPPTPTPFFG QNNQFVSQRG PLQSSNTPYV  300
RAWIDPCSIS AAADHHHHQS VPIHPSFSGI RFASVGGFSG FRIPTRLQGE EEEHDGISDK  360
PSSASSDSRH *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4688635e-70AM468863.2 Vitis vinifera contig VV78X023076.3, whole genome shotgun sequence.
GenBankFQ3818315e-70FQ381831.1 Vitis vinifera clone SS0ABG82YF20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082737.11e-143PREDICTED: transcription factor TCP4-like
RefseqXP_011082738.11e-143PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR52e-96TCP4_ARATH; Transcription factor TCP4
SwissprotQ9MAH82e-96TCP3_ARATH; Transcription factor TCP3
TrEMBLM4PM761e-132M4PM76_9SOLA; TCP trancription factor
STRINGPGSC0003DMT4000322681e-123(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-69TCP family protein